Information

Repository: https://github.com/4DNucleome/PartSeg

PyPi https://pypi.org/project/PartSeg/ so partseg can be installed with pip install PartSeg – may need numpy and cython

Documentation latest

Paper: [TBA]

Authors: Grzegorz Bokota, Subhadip Basu, Nirmal Das, Paweł Trzaskoma, Agnieszka Grabowska, Jacek Sroka, Adriana Magalska, Dariusz Plewczyński

Downloads

PartSeg version 0.11.1 updated: (2020.07.22)

Windows binaries: link

MacOS binaries: link

Linux binaries: link - tested on ubuntu 18.04 (first start may take long)

Release history link

TEM example data link

SEM example data link (87 MB)

Confocal example data link (197 MB)

Documentation

Tutorial: Chromosome 1 (as gui) link

Data for chromosome 1 tutorial link

Tutorial: Different neuron types (as library) link

Plugins

This plugins are avaliable only when using PartSeg as package

Cellpose pip install PartSeg-cellpose link

Stardist pip install PartSeg-stardist link